Package: pastboon
Type: Package
Title: Simulation of Parameterized Stochastic Boolean Networks
Version: 0.1.4
Description: A Boolean network is a particular kind of discrete
        dynamical system where the variables are simple binary
        switches. Despite its simplicity, Boolean network modeling has
        been a successful method to describe the behavioral pattern of
        various phenomena. Applying stochastic noise to Boolean
        networks is a useful approach for representing the effects of
        various perturbing stimuli on complex systems. A number of
        methods have been developed to control noise effects on Boolean
        networks using parameters integrated into the update rules.
        This package provides functions to examine three such methods:
        Boolean network with perturbations (BNp), described by
        Trairatphisan et al. (2013) <doi:10.1186/1478-811X-11-46>,
        stochastic discrete dynamical systems (SDDS), proposed by
        Murrugarra et al. (2012) <doi:10.1186/1687-4153-2012-5>, and
        Boolean network with probabilistic edge weights (PEW),
        presented by Deritei et al. (2022)
        <doi:10.1371/journal.pcbi.1010536>. This package includes
        source code derived from the 'BoolNet' package, which is
        licensed under the Artistic License 2.0.
Authors@R: c(person("Mohammad", "Taheri-Ledari", role = c("aut", "cre","cph"), email = "mo.taheri@ut.ac.ir", comment = c(ORCID = "0009-0007-9132-077X")),
    person("Kaveh", "Kavousi", role = "ctb", email = "kkavousi@ut.ac.ir", comment = c(ORCID = "0000-0002-1906-3912")),
    person("Sayed-Amir", "Marashi", role = "ctb", email = "marashi@ut.ac.ir", comment = c(ORCID = "0000-0001-9801-7449")),
    person(given = "Authors of BoolNet", role = "ctb", comment = "Original authors of the BoolNet package"),
    person(c("Troy", "D."), "Hanson", role = "ctb", comment="Contributed uthash macros"))
Author: Mohammad Taheri-Ledari [aut, cre, cph]
        (<https://orcid.org/0009-0007-9132-077X>), Kaveh Kavousi [ctb]
        (<https://orcid.org/0000-0002-1906-3912>), Sayed-Amir Marashi
        [ctb] (<https://orcid.org/0000-0001-9801-7449>), Authors of
        BoolNet [ctb] (Original authors of the BoolNet package), Troy
        D. Hanson [ctb] (Contributed uthash macros)
Maintainer: Mohammad Taheri-Ledari <mo.taheri@ut.ac.ir>
Depends: R (>= 3.5.0)
Suggests: BoolNet
License: Artistic-2.0
Encoding: UTF-8
LazyData: true
NeedsCompilation: yes
BugReports: https://github.com/taherimo/pastboon/issues
Repository: https://taherimo.r-universe.dev
Date/Publication: 2026-02-08 16:52:44 UTC
RemoteUrl: https://github.com/taherimo/pastboon
RemoteRef: HEAD
RemoteSha: 032ab90b02e72f0079729abac856d2cd77d08478
Packaged: 2026-10-06 10:37:25 UTC; root